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33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMichael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz: Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25(24): 3251-3258 (2009)
32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSascha Steinbiss, Gordon Gremme, Christin Schärfer, Malte Mader, Stefan Kurtz: AnnotationSketch: a genome annotation drawing library. Bioinformatics 25(4): 533-534 (2009)
2008
31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDavid Ellinghaus, Stefan Kurtz, Ute Willhoeft: LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics 9: (2008)
30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: CoCoNUT: an efficient system for the comparison and analysis of genomes. BMC Bioinformatics 9: (2008)
29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJulia Herold, Stefan Kurtz, Robert Giegerich: Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9: (2008)
28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEnno Ohlebusch, Stefan Kurtz: Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences. Journal of Computational Biology 15(4): 357-377 (2008)
2007
27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek: Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204
26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg: Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinformatics 8(S-8): (2007)
2006
25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMichael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz: Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7: 389 (2006)
2005
24no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrew E. Torda, Stefan Kurtz, Matthias Rarey: Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005 GI 2005
23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz: Engineering a software tool for gene structure prediction in higher organisms. Information & Software Technology 47(15): 965-978 (2005)
2004
22no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMichael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz: PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics 2004: 53-64
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich: GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 20(12): 1964-1965 (2004)
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms 2(1): 53-86 (2004)
19no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 301-304 (2004)
2003
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMatthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz: Local Similarity in RNA Secondary Structures. CSB 2003: 159-168
17no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPatrick Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak: An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings in Bioinformatics 4(2): 105-123 (2003)
16no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAlexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research 31(13): 3767-3770 (2003)
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert Giegerich, Stefan Kurtz, Jens Stoye: Efficient implementation of lazy suffix trees. Softw., Pract. Exper. 33(11): 1035-1049 (2003)
2002
14no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMichael Höhl, Stefan Kurtz, Enno Ohlebusch: Efficient multiple genome alignment. ISMB 2002: 312-320
13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz: Optimal Exact Strring Matching Based on Suffix Arrays. SPIRE 2002: 31-43
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: The Enhanced Suffix Array and Its Applications to Genome Analysis. WABI 2002: 449-463
2001
11no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefan Gräf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger: HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research 29(1): 196-198 (2001)
2000
10no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich: Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238
9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBernhard Balkenhol, Stefan Kurtz: Universal Data Compression Based on the Burrows-Wheeler Transformation: Theory and Practice. IEEE Trans. Computers 49(10): 1043-1053 (2000)
1999
8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert Giegerich, Stefan Kurtz, Jens Stoye: Efficient Implementation of Lazy Suffix Trees. Algorithm Engineering 1999: 30-42
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBernhard Balkenhol, Stefan Kurtz, Yuri M. Shtarkov: Modifications of the Burrows and Wheeler Data Compression Algorithm. Data Compression Conference 1999: 188-197
6no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefan Kurtz, Chris Schleiermacher: REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15(5): 426-427 (1999)
5no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefan Kurtz: Reducing the space requirement of suffix trees. Softw., Pract. Exper. 29(13): 1149-1171 (1999)
1997
4no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64
3no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert Giegerich, Stefan Kurtz: From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19(3): 331-353 (1997)
1995
2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert Giegerich, Stefan Kurtz: A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25(2-3): 187-218 (1995)
1994
1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert Giegerich, Stefan Kurtz: Suffix Trees in the Functional Programming Paradigm. ESOP 1994: 225-240

Coauthor Index

1Mohamed Ibrahim Abouelhoda [12] [13] [20] [30]
2Bernhard Balkenhol [7] [9]
3Michael Beckstette [22] [25] [33]
4Ewan Birney [26] [27]
5Volker Brendel [23]
6Patrick Chain [17]
7Jomuna V. Choudhuri [21]
8Sergei Denissov [26]
9David Ellinghaus [31]
10Paul Flicek [26] [27]
11Robert Giegerich [1] [2] [3] [8] [10] [15] [16] [18] [19] [21] [22] [25] [29] [33]
12Stefan Gräf [11] [26] [27]
13Roland Green [26]
14Gordon Gremme [23] [32]
15Julia Herold [29]
16Matthias Höchsmann [18]
17Michael Höhl [14]
18Robert Homann [22] [25] [33]
19Martijn A. Huynen [26] [27]
20Jan Krüger [16] [19]
21Malte Mader [32]
22Henning Mersch [16]
23Eugene W. Myers (Gene Myers) [4]
24Fiona G. G. Nielsen [26] [27]
25Enno Ohlebusch [10] [12] [13] [14] [17] [20] [28] [30]
26Matthias Rarey [24]
27Christin Schärfer [32]
28Chris Schleiermacher [6] [10] [21]
29Alexander Sczyrba [16] [19]
30Yuri M. Shtarkov [7]
31Tom Slezak [17]
32Michael E. Sparks [23]
33Gerhard Steger [11]
34Sascha Steinbiss [32]
35Jens Stoye [8] [10] [15]
36Dirk Strothmann [11] [22]
37Henk Stunnenberg [26] [27]
38Thomas Töller [18]
39Andrew E. Torda [24]
40Ute Willhoeft [31]
41Xinmin Zhang [26]

Colors in the list of coauthors

Copyright © Fri Mar 12 12:56:28 2010 by Michael Ley (ley@uni-trier.de)